Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015903111.1_cds_XP_016453101.1_47259
CDS Infomation

[gene=LOC107777560] [db_xref=GeneID:107777560] [protein=putative cyclic nucleotide-gated ion channel 15] [protein_id=XP_016453101.1] [location=complement(join(62168..62863,63109..63345,63468..63579,63662..63954,64163..64375,64465..65017,65346..65374))] [gbkey=CDS]
Sequence

ATGGCTTATGGTAATTCCAGATCCGTAAGATTTCAAGATGATCTTGAATCAACAAAGTTT
GCAACAATAAATGGAGATAATTTGATTAAAGTGAAGTACAAGATTGATGGATCGCAATTA
CCAGAGCTGGCTAATAGAAAGAATGAAAAAGAGGATATAAGGACCGGAAAATCCCTGAAG
GCTAAAGTATTATCGCGGGTATTCTCAGAAGACTATGAAAGAGTGAAGAAAAAGATACTG
GATCCTCGTGGACCAACAATTCGTAGATGGAACAAGATTTTCTTGGTAGCTTGTTTAGTC
GCTTTATTCGTGGACCCTCTATTCTTTTACTTGCCAGTGGTCCAAGATAAAGTCTGCATT
GATATAGGAACTAATCTGGAAGTTGTCCTTACAGTTATTAGATCAATAGCTGATGTCTTT
TATATGATTCAGATATATGTTCGGTTTAGAACTGCTTATGTTGCTCCATCTTCTCGAGTA
TTTGGGAGAGGAGAGCTTGTTATAGATTCTTCAAAAATAGGTCACAGATACTTTAAAAAA
GGTTTCTGGATCGATATCATTGCTGCCCTGCCTTTACCACAGGTATTAATATGGGCCATT
ATCCCTAATTTAAGTGGCTCAACAATGGCCAACACGAAGAATGTCCTTAGATTCATTATC
ATTTTTCAGTACCTTCCCAGACTTTATCTCATATTTCCACTGTCGTCACAAATAGTAAAA
ACTACCGGTGTTGTTACTGAAACAGCATGGGCAGGAGCTGCTTACAACTTGATGCTTTAC
ATGTTAGCCAGCCATGTAGGAGGAGCTTGTTGGTACCTTCTATCGATTGAGAGGCAAGAA
GCTTGCTGGAGACACACCTGCAGTTTTGAGGAGCGATCTTGTGATTTTGGATATTTTGAC
TGCCGGAGGGTTAAGGATCCACAAAGAAATGCATGGTTCCAGTCCAGCAATATTACAAAG
CAATGTAATCCTAATACTAGTGATTATCCTTTTGGTATTTACAGTGATTCAGTGACAGCT
AATGTGACAACTGCTCCATTTTTCAACAAATACTTCTACTGCCTGTGGTGGGGCTTAAAG
AATCTAAGTTCTCTAGGGCAAAATCTTGCAACAAGCACTTACGTTGGAGAAATAGGTTTT
GCCATCATAATTGCGACCCTCGGCCTAGTTCTGTTTGCATTGCTGATTGGAAATATGCAA
ACTTATCTCCAATCAACAACTGTAAGATTAGAGGAATGGAGAATCAGGAGAACTGATACA
GAACAATGGATGCATCATAGGCAGTTACCTCAAGAACTAAGACAGTCTGTACGGAAGTAT
GATCAATACAAATGGGTGGCTACAAGAGGAGTGGACGAGGAAGCTCTTCTCAAAGGACTT
CCTTTAGATCTCCGTAGAGATATCAAGCGCCACTTGTGCTATGATTTAGTTCGAAGGGTG
CCTCTGTTTGATCAAATGGATGAAAGGATGCTGGACGCAATATGTGAGAGGCTAAAACCT
GCTTTATGCACACAAGGCACTTGTCTTGTGCGCGAGGGTGATCCTGTCAACGAAATGCTC
TTCATAATTCGAGGGAATCTTGATTCTCACACAACCAATGGTGGTCGTACTGGTTTCTTC
AATTCTTGTCGTATTGGTCCAGGTGACTTCTGTGGTGAGGAACTGCTGACATGGGCACTC
GATCCACGTCCAGGTGTGATTCTCCCATCATCCACTAGGACAGTAAAAGCAGTTTCTGAA
GTAGAGTCATTCGCGCTTGTAGCGGAGGACTTAAAGTTTGTTGCATCACAGTTCCGGAGG
CTACATAGCAAACAATTAAGGCACAAATTCAGGTTCTACTCACACCAATGGCGTACTTGG
GCTGCATGCTTCGTTCAAGCAGCATGGCGTAGATATAAAAAGCGAAAGAGTGCAGCCGAG
CTTAGAGCTCTAGAGAACATAATGAATGAAACAGAATCAGTGAGTGGACAGTTGGATAAA
AATGCATCAGCACCAGGATCAGGCTTTTCAGTCTATGCAGCAAAATTGGCAGCAAGTAGA
AGGGGTCACCACAAGCGCTCTAGTTCGGATTCCACTGCAGTTAGCTCATTGCAGAAACCT
GCAGAACCTGATTTCTCAGTTGAAGAAGAGTGA

Peptide Sequence

PEP ID

XP_016453101.1
PEP Infomation

PREDICTED: putative cyclic nucleotide-gated ion channel 15 [Nicotiana tabacum]
Sequence

MAYGNSRSVRFQDDLESTKFATINGDNLIKVKYKIDGSQLPELANRKNEKEDIRTGKSLK
AKVLSRVFSEDYERVKKKILDPRGPTIRRWNKIFLVACLVALFVDPLFFYLPVVQDKVCI
DIGTNLEVVLTVIRSIADVFYMIQIYVRFRTAYVAPSSRVFGRGELVIDSSKIGHRYFKK
GFWIDIIAALPLPQVLIWAIIPNLSGSTMANTKNVLRFIIIFQYLPRLYLIFPLSSQIVK
TTGVVTETAWAGAAYNLMLYMLASHVGGACWYLLSIERQEACWRHTCSFEERSCDFGYFD
CRRVKDPQRNAWFQSSNITKQCNPNTSDYPFGIYSDSVTANVTTAPFFNKYFYCLWWGLK
NLSSLGQNLATSTYVGEIGFAIIIATLGLVLFALLIGNMQTYLQSTTVRLEEWRIRRTDT
EQWMHHRQLPQELRQSVRKYDQYKWVATRGVDEEALLKGLPLDLRRDIKRHLCYDLVRRV
PLFDQMDERMLDAICERLKPALCTQGTCLVREGDPVNEMLFIIRGNLDSHTTNGGRTGFF
NSCRIGPGDFCGEELLTWALDPRPGVILPSSTRTVKAVSEVESFALVAEDLKFVASQFRR
LHSKQLRHKFRFYSHQWRTWAACFVQAAWRRYKKRKSAAELRALENIMNETESVSGQLDK
NASAPGSGFSVYAAKLAASRRGHHKRSSSDSTAVSSLQKPAEPDFSVEEE

Transcript Sequence

Gene sequence data has not been registered.